Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015811548.1_cds_XP_016496762.1_10948
CDS Infomation

[gene=LOC107815660] [db_xref=GeneID:107815660] [protein=probable polygalacturonase] [protein_id=XP_016496762.1] [location=join(45233..45661,49462..49582,50269..50517,51034..51187,51759..52284)] [gbkey=CDS]
Sequence

ATGGTGGAGACGGTAACGACACCGTTTTGGTGGCGGTGTACACAATTCCACCACCCGCGT
CGATGGTTACCGGCAGTTTTCATAACCCACAAAGCCATTATCACTGCGCTATGGATCGCC
TTTTTAATAACCCTTTTCTGGTGGCAGATGGATTCTACTACTACCGGAATCTTGATTTTC
CGGCGAGTTTTTCCGTCGAGGCAGCTGCCGAAGCTCCGGCATGTGGCGTTTAACTTGACG
GACTTTGGTGGGGTTGGTGATGGTGTTACTGTAAATACAGCAGCTTTTGAGAAGGCAGTA
TTAGCAATTTCTAGAAAAGGTGGAGGGCAGCTAAATGTGCCACCTGGTTATTGGCTAACG
GCGCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAAGGTGCTGTTATATTG
GGTGTTGATGACGAGAAGTACTGGCCTCTCATGCCTCCCTTACCTTCATATGGATATGGA
AGAGAGCATCGTGGACCGCGTTATGGAAGTTTAATCCACGGCCAAAATCTCAAAGATGTT
GTAATCACAGGGCATAATGGTACCATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTC
CGGCAGAAGCTTCTTAACCATACCAGAGGACCGCTCGTGCAGATCATGTGGTCTACTGAC
ATACTAATCTCAAATATAACTTTACAAAACTCTCCCTTTTGGACGCTCCATCCATACGAC
TGCAAGAACGTAACGATCAGGAATGTCACAATCCTGGCACCCATTGCTGGGGCTCCAAAT
ACTGATGGTATAGATCCAGATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGT
GTTGGTGATGACGGCATTGCCATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGA
CGGCCTTCTAAGAATATACTCATCCGAAACCTTGTTATTCGTTCCAATGTCAGCGCTGGT
GTATCAATAGGGAGTGAGATGTCCGGCGGAGTGTCAAATGTCACTGTGGAAAATGTCCTT
ATCTGGAACTCGAGACGTGCTGTACGCATCAAAACAGCGCCTGGAAGAGGAGGATATGTT
CGAGATATAACGTACAGGAACTTGACATTTGAGAATGTTAGGGTGGGAATCGTCATCAAA
ACAGATTACAACGAACATGCAGACGAGAGGTTCGACCCCAAAGCTGTCCCTGTACTGAAG
GACATAAGCTACACATCAATCCACGGTGAGGGAGTTCGTGTGCCTGTTCAAATCCACGGG
AGTAAAGAAATCCCTGTGAAGAACGTTACTTTCAGAGATATGTCAGTCGGGCTATCATAC
AAGAAGAAGCATATATTCCAGTGTGCTTTCGTTCAAGGTCGTGTTATTGGTACTATCTTC
CCCGCCCCTTGTGAGAACCTCGATCTATATGACGAGCAAGGACATCTGATCAGACGTTCT
GATTCTCAAAATGCGACAGACATAGATTATGACATTTGA

Peptide Sequence

PEP ID

XP_016496762.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MVETVTTPFWWRCTQFHHPRRWLPAVFITHKAIITALWIAFLITLFWWQMDSTTTGILIF
RRVFPSRQLPKLRHVAFNLTDFGGVGDGVTVNTAAFEKAVLAISRKGGGQLNVPPGYWLT
APFNLTSHMTLFLAEGAVILGVDDEKYWPLMPPLPSYGYGREHRGPRYGSLIHGQNLKDV
VITGHNGTINGQGQAWWKKFRQKLLNHTRGPLVQIMWSTDILISNITLQNSPFWTLHPYD
CKNVTIRNVTILAPIAGAPNTDGIDPDSCEDVLIENCYISVGDDGIAIKSGWDQYGIAYG
RPSKNILIRNLVIRSNVSAGVSIGSEMSGGVSNVTVENVLIWNSRRAVRIKTAPGRGGYV
RDITYRNLTFENVRVGIVIKTDYNEHADERFDPKAVPVLKDISYTSIHGEGVRVPVQIHG
SKEIPVKNVTFRDMSVGLSYKKKHIFQCAFVQGRVIGTIFPAPCENLDLYDEQGHLIRRS
DSQNATDIDYDI

Transcript Sequence

Gene sequence data has not been registered.